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| Variant Type | Calling Status |
|---|---|
| Mutations | Called |
| Copy number | Called |
| Fusions | Called |
| Gene | Somatic Mutations | Classification | Type | VAF | Somatic Copy Number | CN status | Fusions |
|---|---|---|---|---|---|---|---|
| AAGAB | - | - | - | - | 3 | Gain | - |
| ABHD17C | - | - | - | - | 3 | Gain | - |
| ABHD18 | - | - | - | - | 1 | Loss | - |
| ABHD2 | - | - | - | - | 3 | Gain | - |
| AC009690.1 | - | - | - | - | 3 | Gain | - |
| AC009690.3 | - | - | - | - | 3 | Gain | - |
| AC010487.3 | - | - | - | - | 3 | Gain | - |
| AC013394.1 | - | - | - | - | 3 | Gain | - |
| AC013489.1 | - | - | - | - | 3 | Gain | - |
| AC068831.7 | - | - | - | - | 3 | Gain | - |
| AC069368.1 | - | - | - | - | 3 | Gain | - |
| AC087632.1 | - | - | - | - | 3 | Gain | - |
| AC091167.2 | - | - | - | - | 3 | Gain | - |
| AC091167.6 | - | - | - | - | 3 | Gain | - |
| AC091167.7 | - | - | - | - | 3 | Gain | - |
| AC107871.1 | - | - | - | - | 3 | Gain | - |
| AC245033.1 | - | - | - | - | 3 | Gain | - |
| ACAN | - | - | - | - | 3 | Gain | - |
| ACSBG1 | - | - | - | - | 3 | Gain | - |
| ADAM10 | - | - | - | - | 3 | Gain | - |
| ADAMTS7 | - | - | - | - | 3 | Gain | - |
| ADAMTSL3 | - | - | - | - | 3 | Gain | - |
| ADPGK | - | - | - | - | 3 | Gain | - |
| AEN | - | - | - | - | 3 | Gain | - |
| AGBL1 | - | - | - | - | 3 | Gain | - |
| AHCY | p.C421Y | Missense | SNP | 0.526 | 2 | - | - |
| AKAP13 | - | - | - | - | 3 | Gain | - |
| AL139099.4 | - | - | - | - | ND | ND | AL139099.4--RN7SL395P AL139099.4--RN7SK AL139099.4--PLCG2 AL139099.4--RMRP RN7SK--AL139099.4 |
| ALPK3 | - | - | - | - | 3 | Gain | - |
| AMBN | - | - | - | - | 1 | Loss | - |
| AMTN | - | - | - | - | 1 | Loss | - |
| ANKDD1A | - | - | - | - | 3 | Gain | - |
| ANKRD34C | - | - | - | - | 3 | Gain | - |
| ANP32A | - | - | - | - | 3 | Gain | - |
| ANPEP | - | - | - | - | 3 | Gain | - |
| ANXA2 | - | - | - | - | 3 | Gain | - |
| AP3B2 | - | - | - | - | 3 | Gain | - |
| AP3S2 | - | - | - | - | 3 | Gain | - |
| APH1B | - | - | - | - | 3 | Gain | - |
| ARID3B | - | - | - | - | 3 | Gain | - |
| ARIH1 | - | - | - | - | 3 | Gain | - |
| ARNT2 | - | - | - | - | 3 | Gain | - |
| ARPIN | - | - | - | - | 3 | Gain | - |
| BAP1 | - | - | - | - | 3 | Gain | - |
| BBS4 | - | - | - | - | 3 | Gain | - |
| BCL2A1 | - | - | - | - | 3 | Gain | - |
| BET1 | - | - | - | - | 1 | Loss | - |
| BIRC8 | - | - | - | - | 3 | Gain | - |
| BLM | - | - | - | - | 3 | Gain | - |
| BNC1 | - | - | - | - | 3 | Gain | - |
| BNIP2 | - | - | - | - | 3 | Gain | - |
| BTBD1 | - | - | - | - | 3 | Gain | - |
| C15orf38-AP3S2 | - | - | - | - | 3 | Gain | - |
| C15orf39 | - | - | - | - | 3 | Gain | - |
| C15orf40 | - | - | - | - | 3 | Gain | - |
| C15orf61 | - | - | - | - | 3 | Gain | - |
| C2CD4A | - | - | - | - | 3 | Gain | - |
| C2CD4B | - | - | - | - | 3 | Gain | - |
| C4orf33 | - | - | - | - | 1 | Loss | - |
| CA12 | - | - | - | - | 3 | Gain | - |
| CABS1 | - | - | - | - | 1 | Loss | - |
| CALCR | - | - | - | - | 1 | Loss | - |
| CALML4 | - | - | - | - | 3 | Gain | - |
| CASD1 | - | - | - | - | 1 | Loss | - |
| CCDC33 | - | - | - | - | 3 | Gain | - |
| CCNB2 | - | - | - | - | 3 | Gain | - |
| CD276 | - | - | - | - | 3 | Gain | - |
| CELF6 | - | - | - | - | 3 | Gain | - |
| CEMIP | - | - | - | - | 3 | Gain | - |
| CFAP161 | - | - | - | - | 3 | Gain | - |
| CHD2 | - | - | - | - | 3 | Gain | - |
| CHRNA3 | - | - | - | - | 3 | Gain | - |
| CHRNA5 | - | - | - | - | 3 | Gain | - |
| CHRNB4 | - | - | - | - | 3 | Gain | - |
| CIAO2A | - | - | - | - | 3 | Gain | - |
| CIB1 | - | - | - | - | 3 | Gain | - |
| CIB2 | - | - | - | - | 3 | Gain | - |
| CILP | - | - | - | - | 3 | Gain | - |
| CLK3 | - | - | - | - | 3 | Gain | - |
| CLN6 | - | - | - | - | 3 | Gain | - |
| CLPX | - | - | - | - | 3 | Gain | - |
| CNTN3 | p.I229T | Missense | SNP | 0.429 | 2 | - | - |
| COL1A2 | - | - | - | - | 1 | Loss | - |
| COL22A1 | - | - | - | - | 1 | Loss | - |
| COL3A1 | - | - | - | - | 1 | Loss | - |
| COL4A2 | - | - | - | - | 1 | Loss | - |
| COL4A3 | - | - | - | - | 1 | Loss | - |
| COL5A2 | - | - | - | - | 1 | Loss | - |
| COL9A1 | - | - | - | - | 1 | Loss | - |
| COMMD4 | - | - | - | - | 3 | Gain | - |
| CORO2B | - | - | - | - | 3 | Gain | - |
| COX5A | - | - | - | - | 3 | Gain | - |
| CPEB1 | - | - | - | - | 3 | Gain | - |
| CPLX3 | - | - | - | - | 3 | Gain | - |
| CRABP1 | - | - | - | - | 3 | Gain | - |
| CRTC3 | - | - | - | - | 3 | Gain | - |
| CSK | - | - | - | - | 3 | Gain | - |
| CSN1S1 | - | - | - | - | 1 | Loss | - |
| CSN2 | - | - | - | - | 1 | Loss | - |
| CSN3 | - | - | - | - | 1 | Loss | - |
| CSNK1G1 | - | - | - | - | 3 | Gain | - |
| CSPG4 | - | - | - | - | 3 | Gain | - |
| CT62 | - | - | - | - | 3 | Gain | - |
| CTSH | - | - | - | - | 3 | Gain | - |
| CYP11A1 | - | - | - | - | 3 | Gain | - |
| CYP1A1 | - | - | - | - | 3 | Gain | - |
| CYP1A2 | - | - | - | - | 3 | Gain | - |
| DAPK2 | - | - | - | - | 3 | Gain | - |
| DCK | - | - | - | - | 1 | Loss | - |
| DENND4A | - | - | - | - | 3 | Gain | - |
| DET1 | - | - | - | - | 3 | Gain | - |
| DIRC1 | - | - | - | - | 1 | Loss | - |
| DIS3L | - | - | - | - | 3 | Gain | - |
| DNAH1 | - | - | - | - | 3 | Gain | - |
| DNAJA4 | - | - | - | - | 3 | Gain | - |
| DPP8 | - | - | - | - | 3 | Gain | - |
| EDC3 | - | - | - | - | 3 | Gain | - |
| EFL1 | - | - | - | - | 3 | Gain | - |
| ENAM | - | - | - | - | 1 | Loss | - |
| ERVV-1 | - | - | - | - | 3 | Gain | - |
| ERVV-2 | - | - | - | - | 3 | Gain | - |
| ETFA | - | - | - | - | 3 | Gain | - |
| FAH | - | - | - | - | 3 | Gain | - |
| FAM174B | - | - | - | - | 3 | Gain | - |
| FAM219B | - | - | - | - | 3 | Gain | - |
| FAM81A | - | - | - | - | 3 | Gain | - |
| FANCI | - | - | - | - | 3 | Gain | - |
| FBXL22 | - | - | - | - | 3 | Gain | - |
| FBXO22 | - | - | - | - | 3 | Gain | - |
| FDCSP | - | - | - | - | 1 | Loss | - |
| FEM1B | - | - | - | - | 3 | Gain | - |
| FES | - | - | - | - | 3 | Gain | - |
| FLG | - | - | - | - | 3 | Gain | - |
| FLG2 | - | - | - | - | 3 | Gain | - |
| FOXB1 | - | - | - | - | 3 | Gain | - |
| FSD2 | - | - | - | - | 3 | Gain | - |
| FURIN | - | - | - | - | 3 | Gain | - |
| GC | - | - | - | - | 1 | Loss | - |
| GCNT3 | - | - | - | - | 3 | Gain | - |
| GDPGP1 | - | - | - | - | 3 | Gain | - |
| GGTLC2 | - | - | - | - | 1 | Loss | - |
| GLCE | - | - | - | - | 3 | Gain | - |
| GLYCTK | - | - | - | - | 3 | Gain | - |
| GNG11 | - | - | - | - | 1 | Loss | - |
| GNGT1 | - | - | - | - | 1 | Loss | - |
| GOLGA6A | - | - | - | - | 3 | Gain | - |
| GOLGA6B | - | - | - | - | 3 | Gain | - |
| GOLGA6C | - | - | - | - | 3 | Gain | - |
| GOLGA6D | - | - | - | - | 3 | Gain | - |
| GOLGA6L4 | - | - | - | - | 3 | Gain | - |
| GOLGA6L9 | - | - | - | - | 3 | Gain | - |
| GRAMD2A | - | - | - | - | 3 | Gain | - |
| GRSF1 | - | - | - | - | 1 | Loss | - |
| GTF2A2 | - | - | - | - | 3 | Gain | - |
| HACD3 | - | - | - | - | 3 | Gain | - |
| HAPLN3 | - | - | - | - | 3 | Gain | - |
| HCN4 | - | - | - | - | 3 | Gain | - |
| HDDC3 | - | - | - | - | 3 | Gain | - |
| HDGFL3 | - | - | - | - | 3 | Gain | - |
| HERC1 | - | - | - | - | 3 | Gain | - |
| HEXA | - | - | - | - | 3 | Gain | - |
| HMG20A | - | - | - | - | 3 | Gain | - |
| HOMER2 | - | - | - | - | 3 | Gain | - |
| HOXA11 | p.I299Lfs*30 | Frame_Shift_Del | DEL | 0.474 | 2 | - | - |
| HRNR | - | - | - | - | 3 | Gain | - |
| HSPA4L | - | - | - | - | 1 | Loss | - |
| HSPD1 | p.G56E | Missense | SNP | 0.176 | 2 | - | - |
| HTN1 | - | - | - | - | 1 | Loss | - |
| HTN3 | - | - | - | - | 1 | Loss | - |
| HYKK | - | - | - | - | 3 | Gain | - |
| ICE2 | - | - | - | - | 3 | Gain | - |
| IDH2 | - | - | - | - | 3 | Gain | - |
| IDH3A | - | - | - | - | 3 | Gain | - |
| IGDCC3 | - | - | - | - | 3 | Gain | - |
| IGDCC4 | - | - | - | - | 3 | Gain | - |
| IGLL5 | p.M42R p.A54V | Missense Missense | SNP SNP | 1.000 1.000 | 1 | Loss | - |
| IL16 | - | - | - | - | 3 | Gain | - |
| IMP3 | - | - | - | - | 3 | Gain | - |
| INSYN1 | - | - | - | - | 3 | Gain | - |
| INTS14 | - | - | - | - | 3 | Gain | - |
| INTU | - | - | - | - | 1 | Loss | - |
| IQCH | - | - | - | - | 3 | Gain | - |
| IQGAP1 | - | - | - | - | 3 | Gain | - |
| IREB2 | - | - | - | - | 3 | Gain | - |
| ISG20 | - | - | - | - | 3 | Gain | - |
| ISL2 | - | - | - | - | 3 | Gain | - |
| ISLR | - | - | - | - | 3 | Gain | - |
| ISLR2 | - | - | - | - | 3 | Gain | - |
| ITGA11 | - | - | - | - | 3 | Gain | - |
| JADE1 | - | - | - | - | 1 | Loss | - |
| JCHAIN | - | - | - | - | 1 | Loss | - |
| KBTBD13 | - | - | - | - | 3 | Gain | - |
| KIAA1024 | - | - | - | - | 3 | Gain | - |
| KIF23 | - | - | - | - | 3 | Gain | - |
| KIF7 | - | - | - | - | 3 | Gain | - |
| KLHL25 | - | - | - | - | 3 | Gain | - |
| KNTC1 | - | - | - | - | 1 | Loss | - |
| KRTAP1-1 | - | - | - | - | 5 | Amp | - |
| KRTAP1-3 | - | - | - | - | 5 | Amp | - |
| KRTAP1-4 | - | - | - | - | 5 | Amp | - |
| KRTAP1-5 | - | - | - | - | 5 | Amp | - |
| KRTAP10-1 | - | - | - | - | 3 | Gain | - |
| KRTAP10-10 | - | - | - | - | 3 | Gain | - |
| KRTAP10-11 | - | - | - | - | 3 | Gain | - |
| KRTAP10-12 | - | - | - | - | 3 | Gain | - |
| KRTAP10-2 | - | - | - | - | 3 | Gain | - |
| KRTAP10-3 | - | - | - | - | 3 | Gain | - |
| KRTAP10-4 | - | - | - | - | 3 | Gain | - |
| KRTAP10-5 | - | - | - | - | 3 | Gain | - |
| KRTAP10-6 | - | - | - | - | 3 | Gain | - |
| KRTAP10-7 | - | - | - | - | 3 | Gain | - |
| KRTAP10-8 | - | - | - | - | 3 | Gain | - |
| KRTAP10-9 | - | - | - | - | 3 | Gain | - |
| KRTAP12-1 | - | - | - | - | 3 | Gain | - |
| KRTAP12-2 | - | - | - | - | 3 | Gain | - |
| KRTAP12-3 | - | - | - | - | 3 | Gain | - |
| KRTAP12-4 | - | - | - | - | 3 | Gain | - |
| KRTAP16-1 | - | - | - | - | 5 | Amp | - |
| KRTAP2-2 | - | - | - | - | 5 | Amp | - |
| KRTAP29-1 | - | - | - | - | 5 | Amp | - |
| KRTAP3-1 | - | - | - | - | 5 | Amp | - |
| KRTAP3-2 | - | - | - | - | 5 | Amp | - |
| KRTAP3-3 | - | - | - | - | 5 | Amp | - |
| KRTAP4-1 | - | - | - | - | 5 | Amp | - |
| KRTAP4-12 | - | - | - | - | 5 | Amp | - |
| KRTAP4-16 | - | - | - | - | 5 | Amp | - |
| KRTAP4-2 | - | - | - | - | 5 | Amp | - |
| KRTAP4-3 | - | - | - | - | 5 | Amp | - |
| KRTAP4-4 | - | - | - | - | 5 | Amp | - |
| KRTAP4-5 | - | - | - | - | 5 | Amp | - |
| KRTAP4-6 | - | - | - | - | 5 | Amp | - |
| KRTAP4-7 | - | - | - | - | 5 | Amp | - |
| KRTAP4-8 | - | - | - | - | 5 | Amp | - |
| KRTAP4-9 | - | - | - | - | 5 | Amp | - |
| KRTAP9-1 | - | - | - | - | 5 | Amp | - |
| KRTAP9-2 | - | - | - | - | 5 | Amp | - |
| KRTAP9-3 | - | - | - | - | 5 | Amp | - |
| KRTAP9-4 | - | - | - | - | 5 | Amp | - |
| KRTAP9-6 | - | - | - | - | 5 | Amp | - |
| KRTAP9-7 | - | - | - | - | 5 | Amp | - |
| KRTAP9-8 | - | - | - | - | 5 | Amp | - |
| KRTAP9-9 | - | - | - | - | 5 | Amp | - |
| LACTB | - | - | - | - | 3 | Gain | - |
| LARP1B | - | - | - | - | 1 | Loss | - |
| LARP6 | - | - | - | - | 3 | Gain | - |
| LCTL | - | - | - | - | 3 | Gain | - |
| LDHAL6B | - | - | - | - | 3 | Gain | - |
| LINGO1 | - | - | - | - | 3 | Gain | - |
| LMAN1L | - | - | - | - | 3 | Gain | - |
| LOXL1 | - | - | - | - | 3 | Gain | - |
| LRRC49 | - | - | - | - | 3 | Gain | - |
| MAN2A2 | - | - | - | - | 3 | Gain | - |
| MAN2C1 | - | - | - | - | 3 | Gain | - |
| MAP2K1 | - | - | - | - | 3 | Gain | - |
| MAP2K5 | - | - | - | - | 3 | Gain | - |
| MEGF11 | - | - | - | - | 3 | Gain | - |
| MESD | - | - | - | - | 3 | Gain | - |
| MESP1 | - | - | - | - | 3 | Gain | - |
| MESP2 | - | - | - | - | 3 | Gain | - |
| MEX3B | - | - | - | - | 3 | Gain | - |
| MFGE8 | - | - | - | - | 3 | Gain | - |
| MFSD8 | - | - | - | - | 1 | Loss | - |
| MINDY2 | - | - | - | - | 3 | Gain | - |
| MOB1B | - | - | - | - | 1 | Loss | - |
| MORF4L1 | - | - | - | - | 3 | Gain | - |
| MPI | - | - | - | - | 3 | Gain | - |
| MRPL46 | - | - | - | - | 3 | Gain | - |
| MRPS11 | - | - | - | - | 3 | Gain | - |
| MTFMT | - | - | - | - | 3 | Gain | - |
| MTHFS | - | - | - | - | 3 | Gain | - |
| MUC12 | - | - | - | - | 3 | Gain | - |
| MUC17 | - | - | - | - | 3 | Gain | - |
| MUC3A | - | - | - | - | 3 | Gain | - |
| MUC7 | - | - | - | - | 1 | Loss | - |
| MYO1E | - | - | - | - | 3 | Gain | - |
| MYO9A | - | - | - | - | 3 | Gain | - |
| NEIL1 | - | - | - | - | 3 | Gain | - |
| NEO1 | - | - | - | - | 3 | Gain | - |
| NGRN | - | - | - | - | 3 | Gain | - |
| NMB | - | - | - | - | 3 | Gain | - |
| NOX5 | - | - | - | - | 3 | Gain | - |
| NPTN | - | - | - | - | 3 | Gain | - |
| NR2E3 | - | - | - | - | 3 | Gain | - |
| NRG4 | - | - | - | - | 3 | Gain | - |
| NTRK3 | - | - | - | - | 3 | Gain | - |
| OAZ2 | - | - | - | - | 3 | Gain | - |
| ODAM | - | - | - | - | 1 | Loss | - |
| ODF3L1 | - | - | - | - | 3 | Gain | - |
| OPRPN | - | - | - | - | 1 | Loss | - |
| PAQR5 | - | - | - | - | 3 | Gain | - |
| PARP16 | - | - | - | - | 3 | Gain | - |
| PARP6 | - | - | - | - | 3 | Gain | - |
| PCDHA10 | - | - | - | - | 3 | Gain | - |
| PCDHA11 | - | - | - | - | 3 | Gain | - |
| PCDHA12 | - | - | - | - | 3 | Gain | - |
| PCDHA13 | - | - | - | - | 3 | Gain | - |
| PCDHA2 | - | - | - | - | 3 | Gain | - |
| PCDHA3 | - | - | - | - | 3 | Gain | - |
| PCDHA4 | - | - | - | - | 3 | Gain | - |
| PCDHA5 | - | - | - | - | 3 | Gain | - |
| PCDHA6 | - | - | - | - | 3 | Gain | - |
| PCDHA7 | - | - | - | - | 3 | Gain | - |
| PCDHA8 | - | - | - | - | 3 | Gain | - |
| PCDHA9 | - | - | - | - | 3 | Gain | - |
| PCLAF | - | - | - | - | 3 | Gain | - |
| PDCD7 | - | - | - | - | 3 | Gain | - |
| PDE8A | - | - | - | - | 3 | Gain | - |
| PEAK1 | - | - | - | - | 3 | Gain | - |
| PEG10 | - | - | - | - | 1 | Loss | - |
| PEX11A | - | - | - | - | 3 | Gain | - |
| PGRMC2 | - | - | - | - | 1 | Loss | - |
| PHF7 | - | - | - | - | 1 | Loss | - |
| PIAS1 | - | - | - | - | 3 | Gain | - |
| PIF1 | - | - | - | - | 3 | Gain | - |
| PKM | - | - | - | - | 3 | Gain | - |
| PLCG2 | - | - | - | - | 2 | - | AL139099.4--PLCG2 |
| PLEKHO2 | - | - | - | - | 3 | Gain | - |
| PLIN1 | - | - | - | - | 3 | Gain | - |
| PLK4 | - | - | - | - | 1 | Loss | - |
| PLXNA4 | p.A795S | Missense | SNP | 0.135 | 2 | - | - |
| PML | - | - | - | - | 3 | Gain | - |
| POLG | - | - | - | - | 3 | Gain | - |
| PPCDC | - | - | - | - | 3 | Gain | - |
| PPIB | - | - | - | - | 3 | Gain | - |
| PPM1M | - | - | - | - | 3 | Gain | - |
| PRAME | - | - | - | - | 1 | Loss | - |
| PRC1 | - | - | - | - | 3 | Gain | - |
| PRICKLE3 | p.R510H | Missense | SNP | 0.450 | ND | ND | - |
| PRR27 | - | - | - | - | 1 | Loss | - |
| PSMA4 | - | - | - | - | 3 | Gain | - |
| PSTPIP1 | - | - | - | - | 3 | Gain | - |
| PTPN9 | - | - | - | - | 3 | Gain | - |
| RAB11A | - | - | - | - | 3 | Gain | - |
| RAB8B | - | - | - | - | 3 | Gain | - |
| RAMAC | - | - | - | - | 3 | Gain | - |
| RASGRF1 | - | - | - | - | 3 | Gain | - |
| RASL12 | - | - | - | - | 3 | Gain | - |
| RBPMS2 | - | - | - | - | 3 | Gain | - |
| RCCD1 | - | - | - | - | 3 | Gain | - |
| RCN2 | - | - | - | - | 3 | Gain | - |
| REC114 | - | - | - | - | 3 | Gain | - |
| RGMA | - | - | - | - | 3 | Gain | - |
| RHCG | - | - | - | - | 3 | Gain | - |
| RLBP1 | - | - | - | - | 3 | Gain | - |
| RMRP | - | - | - | - | ND | ND | AL139099.4--RMRP |
| RN7SK | - | - | - | - | ND | ND | AL139099.4--RN7SK RN7SK--RN7SKP76 RN7SL1--RN7SK RN7SK--AL139099.4 RN7SK--RN7SL1 |
| RN7SKP48 | - | - | - | - | ND | ND | RN7SKP71--RN7SKP48 |
| RN7SKP62 | - | - | - | - | ND | ND | RN7SKP80--RN7SKP62 |
| RN7SKP71 | - | - | - | - | ND | ND | RN7SKP71--RN7SKP48 |
| RN7SKP76 | - | - | - | - | ND | ND | RN7SK--RN7SKP76 |
| RN7SKP80 | - | - | - | - | ND | ND | RN7SKP80--RN7SKP62 |
| RN7SL1 | - | - | - | - | ND | ND | RN7SL1--RN7SK RN7SK--RN7SL1 |
| RN7SL2 | - | - | - | - | ND | ND | RN7SL2--SNORD3A |
| RN7SL395P | - | - | - | - | ND | ND | AL139099.4--RN7SL395P |
| RNF111 | - | - | - | - | 3 | Gain | - |
| RORA | - | - | - | - | 3 | Gain | - |
| RPL4 | - | - | - | - | 3 | Gain | - |
| RPLP1 | - | - | - | - | 3 | Gain | - |
| RPP25 | - | - | - | - | 3 | Gain | - |
| RPS17 | - | - | - | - | 3 | Gain | - |
| RPS27L | - | - | - | - | 3 | Gain | - |
| RSPH14 | - | - | - | - | 1 | Loss | - |
| RSRC2 | - | - | - | - | 1 | Loss | - |
| RUFY3 | - | - | - | - | 1 | Loss | - |
| SAXO2 | - | - | - | - | 3 | Gain | - |
| SCAMP2 | - | - | - | - | 3 | Gain | - |
| SCAMP5 | - | - | - | - | 3 | Gain | - |
| SCAPER | - | - | - | - | 3 | Gain | - |
| SCLT1 | - | - | - | - | 1 | Loss | - |
| SEC11A | - | - | - | - | 3 | Gain | - |
| SEMA3G | - | - | - | - | 1 | Loss | - |
| SEMA4B | - | - | - | - | 3 | Gain | - |
| SEMA7A | - | - | - | - | 3 | Gain | - |
| SENP8 | - | - | - | - | 3 | Gain | - |
| SGCE | - | - | - | - | 1 | Loss | - |
| SH2D7 | - | - | - | - | 3 | Gain | - |
| SH3GL3 | - | - | - | - | 3 | Gain | - |
| SIN3A | - | - | - | - | 3 | Gain | - |
| SKOR1 | - | - | - | - | 3 | Gain | - |
| SLC24A1 | - | - | - | - | 3 | Gain | - |
| SLC25A31 | - | - | - | - | 1 | Loss | - |
| SLC28A1 | - | - | - | - | 3 | Gain | - |
| SLC4A4 | - | - | - | - | 1 | Loss | - |
| SLC51B | - | - | - | - | 3 | Gain | - |
| SLCO3A1 | - | - | - | - | 3 | Gain | - |
| SLTM | - | - | - | - | 3 | Gain | - |
| SMAD3 | - | - | - | - | 3 | Gain | - |
| SMAD6 | - | - | - | - | 3 | Gain | - |
| SMR3A | - | - | - | - | 1 | Loss | - |
| SMR3B | - | - | - | - | 1 | Loss | - |
| SNAPC5 | - | - | - | - | 3 | Gain | - |
| SNORD3A | - | - | - | - | ND | ND | RN7SL2--SNORD3A |
| SNUPN | - | - | - | - | 3 | Gain | - |
| SNX1 | - | - | - | - | 3 | Gain | - |
| SNX22 | - | - | - | - | 3 | Gain | - |
| SNX33 | - | - | - | - | 3 | Gain | - |
| SPESP1 | - | - | - | - | 3 | Gain | - |
| SPG21 | - | - | - | - | 3 | Gain | - |
| ST20 | - | - | - | - | 3 | Gain | - |
| ST20-MTHFS | - | - | - | - | 3 | Gain | - |
| ST8SIA2 | - | - | - | - | 3 | Gain | - |
| STARD5 | - | - | - | - | 3 | Gain | - |
| STATH | - | - | - | - | 1 | Loss | - |
| STOML1 | - | - | - | - | 3 | Gain | - |
| STRA6 | - | - | - | - | 3 | Gain | - |
| SV2B | - | - | - | - | 3 | Gain | - |
| TBC1D21 | - | - | - | - | 3 | Gain | - |
| TBC1D2B | - | - | - | - | 3 | Gain | - |
| TFPI2 | - | - | - | - | 1 | Loss | - |
| THAP10 | - | - | - | - | 3 | Gain | - |
| THSD4 | - | - | - | - | 3 | Gain | - |
| TICRR | - | - | - | - | 3 | Gain | - |
| TIPIN | - | - | - | - | 3 | Gain | - |
| TLE3 | - | - | - | - | 3 | Gain | - |
| TLN2 | - | - | - | - | 3 | Gain | - |
| TLNRD1 | - | - | - | - | 3 | Gain | - |
| TM6SF1 | - | - | - | - | 3 | Gain | - |
| TMC3 | - | - | - | - | 3 | Gain | - |
| TMED3 | - | - | - | - | 3 | Gain | - |
| TMEM202 | - | - | - | - | 3 | Gain | - |
| TMEM266 | - | - | - | - | 3 | Gain | - |
| TPM1 | - | - | - | - | 3 | Gain | - |
| TRIP4 | - | - | - | - | 3 | Gain | - |
| TSPAN3 | - | - | - | - | 3 | Gain | - |
| TTLL13P | - | - | - | - | 3 | Gain | - |
| TWF2 | - | - | - | - | 3 | Gain | - |
| UACA | - | - | - | - | 3 | Gain | - |
| UBAP1L | - | - | - | - | 3 | Gain | - |
| UBE2Q2 | - | - | - | - | 3 | Gain | - |
| UBE2Q2L | - | - | - | - | 3 | Gain | - |
| UBL7 | - | - | - | - | 3 | Gain | - |
| ULK3 | - | - | - | - | 3 | Gain | - |
| UNC45A | - | - | - | - | 3 | Gain | - |
| USP17L12 | - | - | - | - | 3 | Gain | - |
| USP17L13 | - | - | - | - | 3 | Gain | - |
| USP17L17 | - | - | - | - | 3 | Gain | - |
| USP17L18 | - | - | - | - | 3 | Gain | - |
| USP17L19 | - | - | - | - | 3 | Gain | - |
| USP17L21 | - | - | - | - | 3 | Gain | - |
| USP17L22 | - | - | - | - | 3 | Gain | - |
| USP17L23 | - | - | - | - | 3 | Gain | - |
| USP17L24 | - | - | - | - | 3 | Gain | - |
| USP17L25 | - | - | - | - | 3 | Gain | - |
| USP17L26 | - | - | - | - | 3 | Gain | - |
| USP17L27 | - | - | - | - | 3 | Gain | - |
| USP17L28 | - | - | - | - | 3 | Gain | - |
| USP17L29 | - | - | - | - | 3 | Gain | - |
| USP17L30 | - | - | - | - | 3 | Gain | - |
| USP17L5 | - | - | - | - | 3 | Gain | - |
| USP3 | - | - | - | - | 3 | Gain | - |
| UTP3 | - | - | - | - | 1 | Loss | - |
| VN1R2 | - | - | - | - | 3 | Gain | - |
| VN1R4 | - | - | - | - | 3 | Gain | - |
| VPS13C | - | - | - | - | 3 | Gain | - |
| VPS33B | - | - | - | - | 3 | Gain | - |
| WDR61 | - | - | - | - | 3 | Gain | - |
| WDR73 | - | - | - | - | 3 | Gain | - |
| WDR82 | - | - | - | - | 3 | Gain | - |
| WDR93 | - | - | - | - | 3 | Gain | - |
| WHAMM | - | - | - | - | 3 | Gain | - |
| ZCCHC8 | - | - | - | - | 1 | Loss | - |
| ZFAND6 | - | - | - | - | 3 | Gain | - |
| ZNF160 | - | - | - | - | 3 | Gain | - |
| ZNF28 | - | - | - | - | 3 | Gain | - |
| ZNF280A | - | - | - | - | 1 | Loss | - |
| ZNF280B | - | - | - | - | 1 | Loss | - |
| ZNF320 | - | - | - | - | 3 | Gain | - |
| ZNF347 | - | - | - | - | 3 | Gain | - |
| ZNF415 | - | - | - | - | 3 | Gain | - |
| ZNF468 | - | - | - | - | 3 | Gain | - |
| ZNF534 | - | - | - | - | 3 | Gain | - |
| ZNF578 | - | - | - | - | 3 | Gain | - |
| ZNF592 | - | - | - | - | 3 | Gain | - |
| ZNF600 | - | - | - | - | 3 | Gain | - |
| ZNF609 | - | - | - | - | 3 | Gain | - |
| ZNF611 | - | - | - | - | 3 | Gain | - |
| ZNF665 | - | - | - | - | 3 | Gain | - |
| ZNF677 | - | - | - | - | 3 | Gain | - |
| ZNF701 | - | - | - | - | 3 | Gain | - |
| ZNF710 | - | - | - | - | 3 | Gain | - |
| ZNF761 | - | - | - | - | 3 | Gain | - |
| ZNF765 | - | - | - | - | 3 | Gain | - |
| ZNF774 | - | - | - | - | 3 | Gain | - |
| ZNF808 | - | - | - | - | 3 | Gain | - |
| ZNF813 | - | - | - | - | 3 | Gain | - |
| ZNF816 | - | - | - | - | 3 | Gain | - |
| ZNF816-ZNF321P | - | - | - | - | 3 | Gain | - |
| ZNF83 | - | - | - | - | 3 | Gain | - |
| ZNF845 | - | - | - | - | 3 | Gain | - |
| ZNF888 | - | - | - | - | 3 | Gain | - |
| ZSCAN2 | - | - | - | - | 3 | Gain | - |
| ZWILCH | - | - | - | - | 3 | Gain | - |
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