MDACC-TC435-PDX-P1

Variant Type	Calling Status
Mutations	Called
Copy number	Called
Fusions	No Data

Gene	Somatic Mutations	Classification	Type	VAF	Somatic Copy Number	CN status	Fusions
AAGAB	-	-	-	-	1	Loss	ND
AC004080.3	-	-	-	-	0	Del	ND
AC009690.1	-	-	-	-	1	Loss	ND
AC009690.3	-	-	-	-	1	Loss	ND
AC012531.2	-	-	-	-	0	Del	ND
AC069368.1	-	-	-	-	1	Loss	ND
AC087632.1	-	-	-	-	1	Loss	ND
AC107871.1	-	-	-	-	1	Loss	ND
ADD2	p.T113M	Missense	SNP	0.148	2	-	ND
ADPGK	-	-	-	-	1	Loss	ND
ANKDD1A	-	-	-	-	1	Loss	ND
ANP32A	-	-	-	-	1	Loss	ND
APH1B	-	-	-	-	1	Loss	ND
ARIH1	-	-	-	-	1	Loss	ND
BBS4	-	-	-	-	1	Loss	ND
C15orf61	-	-	-	-	1	Loss	ND
CA12	-	-	-	-	1	Loss	ND
CALML4	-	-	-	-	1	Loss	ND
CAPZA1	p.D35G	Missense	SNP	0.137	2	-	ND
CD276	-	-	-	-	1	Loss	ND
CELF6	-	-	-	-	1	Loss	ND
CIAO2A	-	-	-	-	1	Loss	ND
CILP	-	-	-	-	1	Loss	ND
CLN6	-	-	-	-	1	Loss	ND
CLPX	-	-	-	-	1	Loss	ND
CORO2B	-	-	-	-	1	Loss	ND
CSNK1G1	-	-	-	-	1	Loss	ND
CT62	-	-	-	-	1	Loss	ND
DAPK2	-	-	-	-	1	Loss	ND
DENND4A	-	-	-	-	1	Loss	ND
DIS3L	-	-	-	-	1	Loss	ND
DPP8	-	-	-	-	1	Loss	ND
EBF4	p.A518V	Missense	SNP	0.338	2	-	ND
FBXL22	-	-	-	-	1	Loss	ND
FEM1B	-	-	-	-	1	Loss	ND
GLCE	-	-	-	-	1	Loss	ND
GOLGA6B	-	-	-	-	1	Loss	ND
GRAMD2A	-	-	-	-	1	Loss	ND
HACD3	-	-	-	-	1	Loss	ND
HCN4	-	-	-	-	1	Loss	ND
HERC1	-	-	-	-	1	Loss	ND
HEXA	-	-	-	-	1	Loss	ND
HIGD2B	-	-	-	-	1	Loss	ND
HOXA10	-	-	-	-	0	Del	ND
HOXA11	-	-	-	-	0	Del	ND
HOXA13	-	-	-	-	0	Del	ND
HOXA2	-	-	-	-	0	Del	ND
HOXA3	-	-	-	-	0	Del	ND
HOXA4	-	-	-	-	0	Del	ND
HOXA5	-	-	-	-	0	Del	ND
HOXA6	-	-	-	-	0	Del	ND
HOXA7	-	-	-	-	0	Del	ND
HOXA9	-	-	-	-	0	Del	ND
HOXB4	-	-	-	-	0	Del	ND
HOXB5	-	-	-	-	0	Del	ND
HOXB6	-	-	-	-	0	Del	ND
HOXB7	-	-	-	-	0	Del	ND
HOXB8	-	-	-	-	0	Del	ND
HOXB9	-	-	-	-	0	Del	ND
HOXC10	-	-	-	-	0	Del	ND
HOXC11	-	-	-	-	0	Del	ND
HOXC12	-	-	-	-	0	Del	ND
HOXC13	-	-	-	-	0	Del	ND
HOXC4	-	-	-	-	0	Del	ND
HOXC5	-	-	-	-	0	Del	ND
HOXC6	-	-	-	-	0	Del	ND
HOXC8	-	-	-	-	0	Del	ND
HOXC9	-	-	-	-	0	Del	ND
IGDCC3	-	-	-	-	1	Loss	ND
IGDCC4	-	-	-	-	1	Loss	ND
IGHV2-70	p.T102Kfs*2	Frame_Shift_Del	DEL	0.351	ND	ND	ND
IGLL5	p.L28M p.G109R	Missense Missense	SNP SNP	0.316 0.085	2	-	ND
INTS14	-	-	-	-	1	Loss	ND
IQCH	-	-	-	-	1	Loss	ND
ITGA11	-	-	-	-	1	Loss	ND
KBTBD13	-	-	-	-	1	Loss	ND
KIF23	-	-	-	-	1	Loss	ND
KRTAP5-7	p.V39I	Missense	SNP	0.194	2	-	ND
LACTB	-	-	-	-	1	Loss	ND
LARP6	-	-	-	-	1	Loss	ND
LCTL	-	-	-	-	1	Loss	ND
LRRC49	-	-	-	-	1	Loss	ND
MAP2K1	-	-	-	-	1	Loss	ND
MAP2K5	-	-	-	-	1	Loss	ND
MAP3K12	-	-	-	-	0	Del	ND
MEGF11	-	-	-	-	1	Loss	ND
MLLT10	-	-	-	-	0	Del	ND
MTFMT	-	-	-	-	1	Loss	ND
MUC16	p.R10791W	Missense	SNP	0.185	2	-	ND
MYO9A	-	-	-	-	1	Loss	ND
NEO1	-	-	-	-	1	Loss	ND
NOX5	-	-	-	-	1	Loss	ND
NPTN	-	-	-	-	1	Loss	ND
NR2E3	-	-	-	-	1	Loss	ND
OAZ2	-	-	-	-	1	Loss	ND
OR4A15	p.L161F	Missense	SNP	0.126	2	-	ND
P2RX7	p.Y155H	Missense	SNP	0.060	2	-	ND
PAQR5	-	-	-	-	1	Loss	ND
PARP16	-	-	-	-	1	Loss	ND
PARP6	-	-	-	-	1	Loss	ND
PCBP2	-	-	-	-	0	Del	ND
PCLAF	-	-	-	-	1	Loss	ND
PDCD7	-	-	-	-	1	Loss	ND
PIAS1	-	-	-	-	1	Loss	ND
PIF1	-	-	-	-	1	Loss	ND
PKM	-	-	-	-	1	Loss	ND
PLEKHO2	-	-	-	-	1	Loss	ND
PPIB	-	-	-	-	1	Loss	ND
PSG3	p.R12L p.Q11H	Missense Missense	SNP SNP	0.163 0.164	2	-	ND
RAB11A	-	-	-	-	1	Loss	ND
RAB8B	-	-	-	-	1	Loss	ND
RASL12	-	-	-	-	1	Loss	ND
RBPMS2	-	-	-	-	1	Loss	ND
REC114	-	-	-	-	1	Loss	ND
RPL4	-	-	-	-	1	Loss	ND
RPLP1	-	-	-	-	1	Loss	ND
RPS27L	-	-	-	-	1	Loss	ND
SENP8	-	-	-	-	1	Loss	ND
SKIDA1	-	-	-	-	0	Del	ND
SKOR1	-	-	-	-	1	Loss	ND
SLC24A1	-	-	-	-	1	Loss	ND
SLC51B	-	-	-	-	1	Loss	ND
SMAD3	-	-	-	-	1	Loss	ND
SMAD6	-	-	-	-	1	Loss	ND
SNAPC5	-	-	-	-	1	Loss	ND
SNX1	-	-	-	-	1	Loss	ND
SNX22	-	-	-	-	1	Loss	ND
SPESP1	-	-	-	-	1	Loss	ND
SPG21	-	-	-	-	1	Loss	ND
THAP10	-	-	-	-	1	Loss	ND
THSD4	-	-	-	-	1	Loss	ND
TIPIN	-	-	-	-	1	Loss	ND
TLE3	-	-	-	-	1	Loss	ND
TMEM202	-	-	-	-	1	Loss	ND
TP53	p.X224_splice	Splice_Site	SNP	0.158	2	-	ND
TPM1	-	-	-	-	1	Loss	ND
TRIP4	-	-	-	-	1	Loss	ND
TUBA1A	-	-	-	-	0	Del	ND
TUBA1B	-	-	-	-	0	Del	ND
TUBA1C	-	-	-	-	0	Del	ND
UACA	-	-	-	-	1	Loss	ND
UBAP1L	-	-	-	-	1	Loss	ND
USP3	-	-	-	-	1	Loss	ND
VWA5B1	p.R879C	Missense	SNP	0.144	2	-	ND
ZEB2	-	-	-	-	0	Del	ND
ZNF609	-	-	-	-	1	Loss	ND
ZWILCH	-	-	-	-	1	Loss	ND