MDACC-TC389-PDX-P0

Variant Type	Calling Status
Mutations	Called
Copy number	Called
Fusions	No Data

Gene	Somatic Mutations	Classification	Type	VAF	Somatic Copy Number	CN status	Fusions
AAGAB	-	-	-	-	1	Loss	ND
AC004080.3	-	-	-	-	0	Del	ND
AC009690.1	-	-	-	-	1	Loss	ND
AC009690.3	-	-	-	-	1	Loss	ND
AC012531.2	-	-	-	-	0	Del	ND
AC023509.3	-	-	-	-	1	Loss	ND
AC069368.1	-	-	-	-	1	Loss	ND
AC087632.1	-	-	-	-	1	Loss	ND
AC107871.1	-	-	-	-	1	Loss	ND
ADPGK	-	-	-	-	1	Loss	ND
AFF4	p.G167Afs*24	Frame_Shift_Del	DEL	0.100	2	-	ND
AKAP9	p.H2739Y	Missense	SNP	0.542	2	-	ND
AMER3	p.P204Rfs*62	Frame_Shift_Del	DEL	0.121	2	-	ND
ANKDD1A	-	-	-	-	1	Loss	ND
ANP32A	-	-	-	-	1	Loss	ND
APH1B	-	-	-	-	1	Loss	ND
ARIH1	-	-	-	-	1	Loss	ND
ATF7	-	-	-	-	1	Loss	ND
ATP5MC2	-	-	-	-	1	Loss	ND
BBS4	-	-	-	-	1	Loss	ND
C15orf61	-	-	-	-	1	Loss	ND
CA12	-	-	-	-	1	Loss	ND
CALCOCO1	-	-	-	-	1	Loss	ND
CALML4	-	-	-	-	1	Loss	ND
CD276	-	-	-	-	1	Loss	ND
CELF6	-	-	-	-	1	Loss	ND
CIAO2A	-	-	-	-	1	Loss	ND
CILP	-	-	-	-	1	Loss	ND
CLIP3	p.V501Cfs*4	Frame_Shift_Del	DEL	0.100	2	-	ND
CLN6	-	-	-	-	1	Loss	ND
CLPX	-	-	-	-	1	Loss	ND
CORO2B	-	-	-	-	1	Loss	ND
CSNK1G1	-	-	-	-	1	Loss	ND
CT62	-	-	-	-	1	Loss	ND
DAPK2	-	-	-	-	1	Loss	ND
DCAF4L1	p.K58Rfs*31	Frame_Shift_Del	DEL	0.062	2	-	ND
DENND4A	-	-	-	-	1	Loss	ND
DIS3L	-	-	-	-	1	Loss	ND
DPP8	-	-	-	-	1	Loss	ND
DTD2	p.R6W	Missense	SNP	0.074	2	-	ND
FBXL22	-	-	-	-	1	Loss	ND
FEM1B	-	-	-	-	1	Loss	ND
GLCE	-	-	-	-	1	Loss	ND
GOLGA6B	-	-	-	-	1	Loss	ND
GRAMD2A	-	-	-	-	1	Loss	ND
GUSB	p.S472A p.L255Q p.G252C	Missense Missense Missense	SNP SNP SNP	0.071 0.094 0.077	2	-	ND
HACD3	-	-	-	-	1	Loss	ND
HCN4	-	-	-	-	1	Loss	ND
HERC1	-	-	-	-	1	Loss	ND
HEXA	-	-	-	-	1	Loss	ND
HIGD2B	-	-	-	-	1	Loss	ND
HOXA10	-	-	-	-	0	Del	ND
HOXA11	-	-	-	-	0	Del	ND
HOXA13	-	-	-	-	0	Del	ND
HOXA2	-	-	-	-	0	Del	ND
HOXA3	-	-	-	-	0	Del	ND
HOXA4	-	-	-	-	0	Del	ND
HOXA5	-	-	-	-	0	Del	ND
HOXA6	-	-	-	-	0	Del	ND
HOXA7	-	-	-	-	0	Del	ND
HOXA9	-	-	-	-	0	Del	ND
HOXB4	-	-	-	-	0	Del	ND
HOXB5	-	-	-	-	0	Del	ND
HOXB6	-	-	-	-	0	Del	ND
HOXB7	-	-	-	-	0	Del	ND
HOXB8	-	-	-	-	0	Del	ND
HOXB9	-	-	-	-	0	Del	ND
HOXC10	-	-	-	-	0	Del	ND
HOXC11	-	-	-	-	0	Del	ND
HOXC12	-	-	-	-	0	Del	ND
HOXC13	-	-	-	-	0	Del	ND
HOXC4	-	-	-	-	0	Del	ND
HOXC5	-	-	-	-	0	Del	ND
HOXC6	-	-	-	-	0	Del	ND
HOXC8	-	-	-	-	0	Del	ND
HOXC9	-	-	-	-	0	Del	ND
IFITM3	p.H27Q	Missense	SNP	0.089	2	-	ND
IGDCC3	-	-	-	-	1	Loss	ND
IGDCC4	-	-	-	-	1	Loss	ND
IGLJ3	p.T45A	Missense	SNP	0.852	ND	ND	ND
INSYN1	-	-	-	-	1	Loss	ND
INTS14	-	-	-	-	1	Loss	ND
IQCH	-	-	-	-	1	Loss	ND
ITGA11	-	-	-	-	1	Loss	ND
KBTBD13	-	-	-	-	1	Loss	ND
KIF23	-	-	-	-	1	Loss	ND
LACTB	-	-	-	-	1	Loss	ND
LARP6	-	-	-	-	1	Loss	ND
LCTL	-	-	-	-	1	Loss	ND
LOXL1	-	-	-	-	1	Loss	ND
LRRC49	-	-	-	-	1	Loss	ND
LRRIQ1	p.R1392Q	Missense	SNP	0.349	2	-	ND
MAP2K1	-	-	-	-	1	Loss	ND
MAP2K5	-	-	-	-	1	Loss	ND
MAP3K12	-	-	-	-	0	Del	ND
MEGF11	-	-	-	-	1	Loss	ND
MTFMT	-	-	-	-	1	Loss	ND
MYO9A	-	-	-	-	1	Loss	ND
NEO1	-	-	-	-	1	Loss	ND
NOX5	-	-	-	-	1	Loss	ND
NPFF	-	-	-	-	1	Loss	ND
NPTN	-	-	-	-	1	Loss	ND
NR2E3	-	-	-	-	1	Loss	ND
OAZ2	-	-	-	-	1	Loss	ND
PAGE1	p.A54G	Missense	SNP	0.155	ND	ND	ND
PAQR5	-	-	-	-	1	Loss	ND
PARP16	-	-	-	-	1	Loss	ND
PARP6	-	-	-	-	1	Loss	ND
PCDHGA3	p.R596G	Missense	SNP	0.067	2	-	ND
PCLAF	-	-	-	-	1	Loss	ND
PDCD7	-	-	-	-	1	Loss	ND
PIAS1	-	-	-	-	1	Loss	ND
PID1	p.T168I	Missense	SNP	0.444	2	-	ND
PIF1	-	-	-	-	1	Loss	ND
PKM	-	-	-	-	1	Loss	ND
PLEKHO2	-	-	-	-	1	Loss	ND
PPIB	-	-	-	-	1	Loss	ND
RAB11A	-	-	-	-	1	Loss	ND
RAB8B	-	-	-	-	1	Loss	ND
RASL12	-	-	-	-	1	Loss	ND
RBPMS2	-	-	-	-	1	Loss	ND
REC114	-	-	-	-	1	Loss	ND
RPL4	-	-	-	-	1	Loss	ND
RPLP1	-	-	-	-	1	Loss	ND
RPS27L	-	-	-	-	1	Loss	ND
SENP8	-	-	-	-	1	Loss	ND
SKOR1	-	-	-	-	1	Loss	ND
SLC24A1	-	-	-	-	1	Loss	ND
SLC51B	-	-	-	-	1	Loss	ND
SMAD3	-	-	-	-	1	Loss	ND
SMAD6	-	-	-	-	1	Loss	ND
SNAPC5	-	-	-	-	1	Loss	ND
SNX1	-	-	-	-	1	Loss	ND
SNX22	-	-	-	-	1	Loss	ND
SPESP1	-	-	-	-	1	Loss	ND
SPG21	-	-	-	-	1	Loss	ND
STOML1	-	-	-	-	1	Loss	ND
TARBP2	-	-	-	-	1	Loss	ND
TBC1D21	-	-	-	-	1	Loss	ND
THAP10	-	-	-	-	1	Loss	ND
THSD4	-	-	-	-	1	Loss	ND
TIPIN	-	-	-	-	1	Loss	ND
TLE3	-	-	-	-	1	Loss	ND
TMEM202	-	-	-	-	1	Loss	ND
TPM1	-	-	-	-	1	Loss	ND
TRIP4	-	-	-	-	1	Loss	ND
TUBD1	p.Y426H	Missense	SNP	0.417	2	-	ND
UACA	-	-	-	-	1	Loss	ND
UBAP1L	-	-	-	-	1	Loss	ND
USP3	-	-	-	-	1	Loss	ND
ZEB2	-	-	-	-	0	Del	ND
ZNF250	p.C166F	Missense	SNP	0.543	2	-	ND
ZNF609	-	-	-	-	1	Loss	ND
ZWILCH	-	-	-	-	1	Loss	ND