Research Article: Comprehensive Characterization of 536 Patient-Derived Xenograft Models Prioritizes Candidates for Targeted Treatment

Patient-derived xenografts (PDX) are models of cancer where the tissue or cells from a patient's tumor are implanted into an immunedeficient or humanized mouse. PDX models simulate human tumor biology allowing for natural cancer progression, and offer the most translational research model for evaluating efficacy.

We conducted a comprehensive analysis of genomic alterations in a cohort of PDX samples from 536 PDX models taken from 25 cancer types. Whole-exome sequencing (WES) and RNA-seq data for human and PDX samples were collected from multiple centers (see chart).

The table at right shows the numbers of PDX models studied by cancer type. Click the links to view lists of models, samples, and somatic variants.

Cancer
Type
Cancer
Description
Number of
Models
BLCABladder/urothelial carcinoma34
BRCABreast carcinoma106
CESCCervical carcinoma3
COADColon adenocarcinoma70
CSCCCutaneous squamous cell carcinoma2
GBMGlioblastoma multiforme2
GIADGastrointestinal carcinoma, NOS3
GISTGastrointestinal stromal tumor1
HNSCHead-and-neck squamous cell carcinoma36
KIRCKidney renal clear cell carcinoma14
LUADLung adenocarcinoma37
LUASLung adenosquamous carcinoma1
LUSCLung squamous cell carcinoma28
MCCMerkel cell tumor4
MESOMesothelioma2
OVOvarian carcinoma (epithelial or NOS)3
OtherOther32
PAADPancreatic adenocarcinoma41
PRADProstate carcinoma, NOS1
READRectal adenocarcinoma8
SARCSarcoma50
SCLCSmall cell lung carcinoma7
SKCMSkin cutaneous melanoma41
STADStomach adenocarcinoma3
UCECUterine corpus endometrial carcinoma3
UCSUterine carcinosarcoma4
Total536

References

Sun, H., Cao, S., Mashl, R.J. et al. Comprehensive characterization of 536 patient-derived xenograft models prioritizes candidates for targeted treatment. Nat Commun 12, 5086 (2021). https://doi.org/10.1038/s41467-021-25177-3 [LINK]